Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs7790858 chr7:127776159 G/C 1.78E-9 134 42.27 37.53 12.55 KM Plot
TGCT rs77958262 chr6:15238009 G/A 6.08E-5 133 37.95 45.1 NA KM Plot
TGCT rs7801895 chr7:126927463 G/C 3.7E-6 132 42.1 65.47 57.52 KM Plot
TGCT rs7803526 chr7:23686084 G/A 6.76E-5 129 30.45 36.23 49.93 KM Plot
TGCT rs78046790 chr2:29497257 A/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs7812812 chr8:116902470 C/T 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs7813113 chr8:120873842 C/T 8.17E-5 134 45.7 37.3 17.1 KM Plot
TGCT rs78188950 chr6:15236667 C/T 6.08E-5 133 37.95 45.1 NA KM Plot
TGCT rs78261232 chr2:29493798 A/G 0 134 42.27 25.02 0.57 KM Plot
TGCT rs78313351 chr7:127775902 G/A 1.78E-9 134 42.27 37.53 12.55 KM Plot
TGCT rs7832162 chr8:116906330 G/A 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs7832614 chr8:103088573 G/C 0.000113 132 42.27 36.1 48.45 KM Plot
TGCT rs7836109 chr8:116912796 C/A 7.41E-7 134 45.7 28.7 18.83 KM Plot
TGCT rs78410207 chr1:42112627 A/G 0 132 42.03 28.8 0.57 KM Plot
TGCT rs78675401 chr7:33054114 CTT/C 1.55E-5 133 42.1 39.78 75.65 KM Plot